1ZKI Structural Genomics, Unknown Function date May 02, 2005
title Structure Of Conserved Protein Pa5202 From Pseudomonas Aerug
authors M.E.Cuff, E.Evdokimova, A.Edwards, A.Savchenko, A.Joachimiak, Mid Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Pa5202
Chain: A, B
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Pao1
Gene: Pa5202
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11
symmetry Space Group: P 31 2 1
R_factor 0.160 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.948 57.948 113.502 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand ACY, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and activity of the Pseudomonas aeruginosa hotdog-fold thioesterases PA5202 and PA2801., Gonzalez CF, Tchigvintsev A, Brown G, Flick R, Evdokimova E, Xu X, Osipiuk J, Cuff ME, Lynch S, Joachimiak A, Savchenko A, Yakunin AF, Biochem J. 2012 Jun 15;444(3):445-55. PMID:22439787
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1zki.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1ZKI
  • CSU: Contacts of Structural Units for 1ZKI
  • Likely Quarternary Molecular Structure file(s) for 1ZKI
  • Structure Factors (367 Kb)
  • Retrieve 1ZKI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZKI from S2C, [Save to disk]
  • Re-refined 1zki structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZKI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZKI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZKI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zki] [1zki_A] [1zki_B]
  • SWISS-PROT database: [Q9HTY7]
  • Domain organization of [Q9HTY7_PSEAE] by SWISSPFAM
  • Other resources with information on 1ZKI
  • Community annotation for 1ZKI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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