1ZL8 Protein Binding date May 05, 2005
title Nmr Structure Of L27 Heterodimer From C. Elegans Lin-7 And H Lin-2 Scaffold Proteins
authors K.Y.Petrosky, H.D.Ou, F.Lohr, V.Dotsch, W.A.Lim
compound source
Molecule: Lin-7
Chain: A
Fragment: L27 Domain
Engineered: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Lin7
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19b

Molecule: Peripheral Plasma Membrane Protein Cask
Chain: B
Fragment: L27 Domain
Synonym: Hcask, Calciumcalmodulin-Dependent Serine Protein Lin-2 Homolog;
Ec: 2.7.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cask, Lin2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19b
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1 BRENDA
note 1ZL8 is a representative structure
Primary referenceA General Model for Preferential Hetero-oligomerization of LIN-2/7 Domains: MECHANISM UNDERLYING DIRECTED ASSEMBLY OF SUPRAMOLECULAR SIGNALING COMPLEXES., Petrosky KY, Ou HD, Lohr F, Dotsch V, Lim WA, J Biol Chem 2005 Nov 18;280(46):38528-36. Epub 2005 Sep 7. PMID:16147993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (1zl8.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1ZL8
  • Retrieve 1ZL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZL8 from S2C, [Save to disk]
  • View 1ZL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZL8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZL8, from MSDmotif at EBI
  • Fold representative 1zl8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zl8_B] [1zl8] [1zl8_A]
  • SWISS-PROT database: [O14936] [P90976]
  • Domain organization of [CSKP_HUMAN] [P90976_CAEEL] by SWISSPFAM
  • Domain found in 1ZL8: [L27 ] by SMART
  • Alignments of the sequence of 1ZL8 with the sequences similar proteins can be viewed for 1ZL8's classification [CSKP_HUMAN] [P90976_CAEEL] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CSKP_HUMAN] [P90976_CAEEL] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1ZL8
  • Community annotation for 1ZL8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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