1ZLY Transferase date May 09, 2005
title The Structure Of Human Glycinamide Ribonucleotide Transformy Complex With Alpha,Beta-N-(Hydroxyacetyl)-D-Ribofuranosylam 10-Formyl-5,8,Dideazafolate
authors T.E.S.Dahms, G.Sainz, E.L.Giroux, C.A.Caperelli, J.L.Smith
compound source
Molecule: Phosphoribosylglycinamide Formyltransferase
Chain: A
Fragment: Residues 808-1010, Gart
Synonym: Gart, Gar Transformylase, 5'-Phosphoribosylglycina Transformylase;
Ec: 2.1.2.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gart, Prgs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: P 32 2 1
R_factor 0.190 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.900 75.900 101.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
ligand DQB, GRF enzyme Transferase E.C.2.1.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe apo and ternary complex structures of a chemotherapeutic target: human glycinamide ribonucleotide transformylase(,)., Dahms TE, Sainz G, Giroux EL, Caperelli CA, Smith JL, Biochemistry 2005 Jul 26;44(29):9841-50. PMID:16026156
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1zly.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1ZLY
  • CSU: Contacts of Structural Units for 1ZLY
  • Likely Quarternary Molecular Structure file(s) for 1ZLY
  • Structure Factors (152 Kb)
  • Retrieve 1ZLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZLY from S2C, [Save to disk]
  • Re-refined 1zly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZLY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZLY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zly_A] [1zly]
  • SWISS-PROT database: [P22102]
  • Domain organization of [PUR2_HUMAN] by SWISSPFAM
  • Other resources with information on 1ZLY
  • Community annotation for 1ZLY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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