1ZNM Zinc Finger date Nov 20, 1997
title A Zinc Finger With An Artificial Beta-Turn, Original Sequenc From The Third Zinc Finger Domain Of The Human Transcriptio Repressor Protein Yy1 (Ying And Yang 1, A Delta Transcripti Factor), Nmr, 34 Structures
authors J.H.Viles, S.U.Patel, J.B.O.Mitchell, C.M.Moody, D.E.Justice, J.Uppenbrink, P.M.Doyle, C.J.Harris, P.J.Sadler, J.M.Thornton
compound source
Molecule: Yy1
Chain: A
Fragment: Zinc Finger Dna Binding Domain 3 From Yy1
Synonym: Zn-Btd(7,8)-3yy1
Engineered: Yes
Other_details: Does Not Bind Dna Specifically As A Single Z
Synthetic: Yes
Other_details: Sequence Synthesised Using Fmoc Chemistry, W Turn Mimetic Btd In Positions 7 And 8
methodSolution NMR
ligand NVA, ZN enzyme
Primary referenceDesign, synthesis and structure of a zinc finger with an artificial beta-turn., Viles JH, Patel SU, Mitchell JB, Moody CM, Justice DE, Uppenbrink J, Doyle PM, Harris CJ, Sadler PJ, Thornton JM, J Mol Biol 1998 Jun 19;279(4):973-86. PMID:9642075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (1znm.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 1ZNM
  • CSU: Contacts of Structural Units for 1ZNM
  • Retrieve 1ZNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZNM from S2C, [Save to disk]
  • View 1ZNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZNM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZNM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1znm__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1znm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1znm] [1znm_A]
  • SWISS-PROT database: [P25490]
  • Domain organization of [TYY1_HUMAN] by SWISSPFAM
  • Domain found in 1ZNM: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1ZNM
  • Community annotation for 1ZNM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science