1ZPG Hydrolase date May 16, 2005
title Arginase I Covalently Modified With Propylamine At Q19c
authors D.M.Colleluori, R.S.Reczkowski, F.A.Emig, E.Cama, J.D.Cox, L.R.Sc K.Compher, K.Jude, S.Han, R.E.Viola, D.W.Christianson, D.E.Ash
compound source
Molecule: Arginase 1
Chain: A, B, C
Synonym: Liver-Type Arginase
Ec: 3.5.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Arg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset C
symmetry Space Group: P 32
R_factor 0.198 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.184 88.184 106.652 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand BPE, MN enzyme Hydrolase E.C.3.5.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceProbing the role of the hyper-reactive histidine residue of arginase., Colleluori DM, Reczkowski RS, Emig FA, Cama E, Cox JD, Scolnick LR, Compher K, Jude K, Han S, Viola RE, Christianson DW, Ash DE, Arch Biochem Biophys 2005 Dec 1;444(1):15-26. Epub 2005 Oct 13. PMID:16266687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (1zpg.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (1zpg.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (1zpg.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (1zpg.pdb4.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 1ZPG
  • CSU: Contacts of Structural Units for 1ZPG
  • Likely Quarternary Molecular Structure file(s) for 1ZPG
  • Structure Factors (502 Kb)
  • Retrieve 1ZPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZPG from S2C, [Save to disk]
  • Re-refined 1zpg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZPG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZPG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zpg_C] [1zpg_B] [1zpg] [1zpg_A]
  • SWISS-PROT database: [P07824]
  • Domain organization of [ARGI1_RAT] by SWISSPFAM
  • Other resources with information on 1ZPG
  • Community annotation for 1ZPG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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