1ZQX Nucleotidyltransferase date Apr 19, 1996
title Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain; Soa Presence Of Kcl (150 Millimolar)
authors H.Pelletier, M.R.Sawaya
compound source
Molecule: Dna Polymerase Beta
Chain: A
Fragment: C-Terminal 31-Kd Domain (Residues 88 - 335)
Ec: 2.7.7.7
Engineered: Yes
Other_details: Soaked In The Presence Of Kcl (150 Millimola
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_gene: Pol
symmetry Space Group: P 21 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.789 63.188 38.588 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Transferase E.C.2.7.7.7 BRENDA
related structures by homologous chain: 1BPX, 9ICW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCharacterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis., Pelletier H, Sawaya MR, Biochemistry 1996 Oct 1;35(39):12778-87. PMID:8841120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1zqx.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1ZQX
  • Likely Quarternary Molecular Structure file(s) for 1ZQX
  • Structure Factors (90 Kb)
  • Retrieve 1ZQX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZQX from S2C, [Save to disk]
  • Re-refined 1zqx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZQX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZQX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZQX, from MSDmotif at EBI
  • Genome occurence of 1ZQX's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1zqx_2, region 149-335 [Jmol] [rasmolscript] [script source]
        - Domain d1zqx_1, region 91-148 [Jmol] [rasmolscript] [script source]
  • Fold representative 1zqx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zqx] [1zqx_A]
  • SWISS-PROT database: [P06766]
  • Domain organization of [DPOLB_RAT] by SWISSPFAM
  • Domains found in 1ZQX: [HhH1] [POLXc ] by SMART
  • Other resources with information on 1ZQX
  • Community annotation for 1ZQX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science