1ZRH Transferase date May 19, 2005
title Crystal Structure Of Human Heparan Sulfate Glucosamine 3-O- Sulfotransferase 1 In Complex With Pap
authors A.Dong, L.Dombrovski, P.Loppnau, M.Sundstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Structural Genomics Consortium (Sgc)
compound source
Molecule: Heparan Sulfate Glucosamine 3-O-Sulfotransferase 1;
Chain: A
Synonym: Sulfotransferase Hs3st1; Heparan Sulfate D- Glucosaminyl 3-O-Sulfotransferase 1; Heparan Sulfate 3-O- Sulfotransferase 1; H3-Ost-1;
Ec: 2.8.2.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hs3st1, 3ost, 3ost1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 2
R_factor 0.184 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.887 135.255 48.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand A3P enzyme Transferase E.C.2.8.2.23 BRENDA
note 1ZRH is a representative structure
related structures by homologous chain: 1VKJ
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1zrh.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1ZRH
  • CSU: Contacts of Structural Units for 1ZRH
  • Likely Quarternary Molecular Structure file(s) for 1ZRH
  • Structure Factors (175 Kb)
  • Retrieve 1ZRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZRH from S2C, [Save to disk]
  • Re-refined 1zrh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZRH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZRH, from MSDmotif at EBI
  • Fold representative 1zrh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zrh] [1zrh_A]
  • SWISS-PROT database: [O14792]
  • Domain organization of [HS3S1_HUMAN] by SWISSPFAM
  • Other resources with information on 1ZRH
  • Community annotation for 1ZRH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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