1ZS6	Transferase	date	May 23, 2005
title	Structure Of Human Nucleoside-Diphosphate Kinase 3
authors	J.Choe, S.Dimov, C.Arrowsmith, A.Edwards, M.Sundstrom, A.Bochkare Structural Genomics Consortium (Sgc)
compound		source
Molecule: Nucleoside Diphosphate Kinase 3 Chain: A, B, D Synonym: Ndk 3, Ndp Kinase 3, Nucleoside Diphosphate Kinase Nm23-H3, Dr-Nm23; Ec: 2.7.4.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nme3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 43 21 2	R_factor 0.211 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.614 86.614 126.856 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ADP	enzyme	Transferase E.C.2.7.4.6 BRENDA
related structures	by homologous chain: 1EHW, 1LWX, 2BEF
Gene Ontology	Chain Function Process Component A, D, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (1zs6.pdb1.gz) 147 Kb LPC: Ligand-Protein Contacts for 1ZS6 CSU: Contacts of Structural Units for 1ZS6 Likely Quarternary Molecular Structure file(s) for 1ZS6 Structure Factors (166 Kb) Retrieve 1ZS6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZS6 from S2C, [Save to disk] Re-refined 1zs6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZS6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZS6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZS6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zs6_A] [1zs6_B] [1zs6] [1zs6_D] SWISS-PROT database: [Q13232] Domain organization of [NDK3_HUMAN] by SWISSPFAM Domain found in 1ZS6: [NDK ] by SMART

Other resources with information on 1ZS6

Community annotation for 1ZS6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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