1ZS8	Immune System	date	Jul 22, 2005
title	Crystal Structure Of The Murine Mhc Class Ib Molecule M10.5
authors	R.Olson, K.E.Huey-Tubman, C.Dulac, P.J.Bjorkman
compound		source
Molecule: Histocompatibility 2, M Region Locus 10.5 Chain: A, C, E, G, I Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: M10.5 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Tn5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacuw31
Molecule: Beta-2-Microglobulin Chain: B, D, F, H, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Tn5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacuw31
symmetry	Space Group: P 21 21 21	R_factor 0.307 R_Free 0.308
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.110 134.710 149.370 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A, E, C, I, G F, J, B, H, D cellular response to iron io...
Primary reference	Structure of a pheromone receptor-associated MHC molecule with an open and empty groove., Olson R, Huey-Tubman KE, Dulac C, Bjorkman PJ, PLoS Biol. 2005 Aug;3(8):e257. Epub 2005 Jul 12. PMID:16089503

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk] Biological Unit Coordinates (1zs8.pdb1.gz) 59 Kb Biological Unit Coordinates (1zs8.pdb2.gz) 58 Kb Biological Unit Coordinates (1zs8.pdb3.gz) 59 Kb Biological Unit Coordinates (1zs8.pdb4.gz) 59 Kb Biological Unit Coordinates (1zs8.pdb5.gz) 59 Kb Biological Unit Coordinates (1zs8.pdb6.gz) 274 Kb LPC: Ligand-Protein Contacts for 1ZS8 CSU: Contacts of Structural Units for 1ZS8 Likely Quarternary Molecular Structure file(s) for 1ZS8 Structure Factors (445 Kb) Retrieve 1ZS8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZS8 from S2C, [Save to disk] Re-refined 1zs8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZS8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZS8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZS8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zs8_I] [1zs8_G] [1zs8_A] [1zs8_E] [1zs8_F] [1zs8] [1zs8_J] [1zs8_C] [1zs8_H] [1zs8_D] [1zs8_B] SWISS-PROT database: [P61769] [Q860W6] Domain organization of [B2MG_HUMAN] [Q860W6_MOUSE] by SWISSPFAM Domain found in 1ZS8: [IGc1 ] by SMART

Other resources with information on 1ZS8

Community annotation for 1ZS8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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