1ZTG Dna, Rna Binding Protein Dna date May 27, 2005
title Human Alpha Polyc Binding Protein Kh1
authors M.Sidiqi, J.A.Wilce, A.Barker, J.Schmidgerger, P.J.Leedman, M.C.J
compound source
Molecule: Poly(Rc)-Binding Protein 1
Chain: A, B, C, D
Fragment: Kh1
Synonym: Pcbp1, Alpha-Cp1, Hnrnp-E1, Nucleic Acid Binding P Sub2.3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p2

Molecule: 5'-D(Pcpcpcptpcpcpcpt)-3'
Chain: Y, Z
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.240 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.600 76.800 61.400 90.00 111.70 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceContribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides., Yoga YM, Traore DA, Sidiqi M, Szeto C, Pendini NR, Barker A, Leedman PJ, Wilce JA, Wilce MC, Nucleic Acids Res. 2012 Feb 16. PMID:22344691
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1ztg.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1ztg.pdb2.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1ZTG
  • Likely Quarternary Molecular Structure file(s) for 1ZTG
  • Structure Factors (53 Kb)
  • Retrieve 1ZTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZTG from S2C, [Save to disk]
  • Re-refined 1ztg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZTG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZTG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ztg_B] [1ztg_Y] [1ztg_A] [1ztg_Z] [1ztg_D] [1ztg_C] [1ztg]
  • SWISS-PROT database: [Q15365]
  • Domain organization of [PCBP1_HUMAN] by SWISSPFAM
  • Domain found in 1ZTG: [KH ] by SMART
  • Other resources with information on 1ZTG
  • Community annotation for 1ZTG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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