1ZTT Transferase Dna date May 27, 2005
title Netropsin Bound To D(Cttaattcgaattaag) In Complex With Mmlv Rt Catalytic Fragment
authors K.D.Goodwin, E.C.Long, M.M.Georgiadis
compound source
Molecule: 5'-D(Cptptpapaptptpc)-3'
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Pgpapaptptpapapg)-3'
Chain: G
Engineered: Yes

Synthetic: Yes

Molecule: Reverse Transcriptase
Chain: A
Fragment: Rt Catalytic Fragment
Synonym: Rt
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Moloney Murine Leukemia Virus
Organism_taxid: 11801
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.220 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.569 145.611 46.811 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand NT enzyme Transferase E.C.2.7.7.49 BRENDA
Primary referenceA host-guest approach for determining drug-DNA interactions: an example using netropsin., Goodwin KD, Long EC, Georgiadis MM, Nucleic Acids Res 2005 Jul 27;33(13):4106-16. Print 2005. PMID:16049022
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1ztt.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 1ZTT
  • CSU: Contacts of Structural Units for 1ZTT
  • Likely Quarternary Molecular Structure file(s) for 1ZTT
  • Structure Factors (237 Kb)
  • Retrieve 1ZTT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZTT from S2C, [Save to disk]
  • Re-refined 1ztt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZTT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZTT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZTT, from MSDmotif at EBI
  • Fold representative 1ztt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ztt_B] [1ztt_A] [1ztt_G] [1ztt]
  • SWISS-PROT database: [P03355]
  • Domain organization of [POL_MLVMO] by SWISSPFAM
  • Other resources with information on 1ZTT
  • Community annotation for 1ZTT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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