1ZUM Oxidoreductase date May 31, 2005
title Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, Al Form
authors H.N.Larson, H.Weiner, T.D.Hurley
compound source
Molecule: Aldehyde Dehydrogenase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Aldh Class 2, Aldhi, Aldh-E2, Aldh22
Ec: 1.2.1.3
Engineered: Yes
Mutation: Yes
Other_details: (Does Not Contain Mitochondrial Leader Seque
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh2, Aldm
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt-7-7
symmetry Space Group: P 1
R_factor 0.204 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.873 105.261 162.672 78.81 81.95 88.04
method X-Ray Diffractionresolution 2.10 Å
ligand EDO, GAI, NA enzyme Oxidoreductase E.C.1.2.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceDisruption of the coenzyme binding site and dimer interface revealed in the crystal structure of mitochondrial aldehyde dehydrogenase "asian" variant., Larson HN, Weiner H, Hurley TD, J Biol Chem 2005 Aug 26;280(34):30550-6. Epub 2005 Jun 27. PMID:15983043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (930 Kb) [Save to disk]
  • Biological Unit Coordinates (1zum.pdb1.gz) 316 Kb
  • Biological Unit Coordinates (1zum.pdb2.gz) 322 Kb
  • Biological Unit Coordinates (1zum.pdb3.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 1ZUM
  • CSU: Contacts of Structural Units for 1ZUM
  • Likely Quarternary Molecular Structure file(s) for 1ZUM
  • Structure Factors (2942 Kb)
  • Retrieve 1ZUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZUM from S2C, [Save to disk]
  • Re-refined 1zum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZUM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZUM, from MSDmotif at EBI
  • Fold representative 1zum from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zum] [1zum_B] [1zum_H] [1zum_L] [1zum_D] [1zum_F] [1zum_J] [1zum_A] [1zum_E] [1zum_G] [1zum_I] [1zum_K] [1zum_C]
  • SWISS-PROT database: [P05091]
  • Domain organization of [ALDH2_HUMAN] by SWISSPFAM
  • Other resources with information on 1ZUM
  • Community annotation for 1ZUM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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