1ZY7	Hydrolase	date	Jun 09, 2005
title	Crystal Structure Of The Catalytic Domain Of An Adenosine De That Acts On Rna (Hadar2) Bound To Inositol Hexakisphosphat
authors	M.R.Macbeth, H.L.Schubert, A.P.Vandemark, A.T.Lingam, C.P.Hill, B
compound		source
Molecule: Rna-Specific Adenosine Deaminase B1, Isoform Drad Chain: A, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_strain: Bcy123 Expression_system_vector_type: Plasmid Expression_system_vector: Pjeltrc6
symmetry	Space Group: P 21 21 21	R_factor 0.173 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.205 121.192 127.331 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	IHP, SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing., Macbeth MR, Schubert HL, Vandemark AP, Lingam AT, Hill CP, Bass BL, Science 2005 Sep 2;309(5740):1534-9. PMID:16141067

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk] Biological Unit Coordinates (1zy7.pdb1.gz) 68 Kb Biological Unit Coordinates (1zy7.pdb2.gz) 63 Kb LPC: Ligand-Protein Contacts for 1ZY7 CSU: Contacts of Structural Units for 1ZY7 Likely Quarternary Molecular Structure file(s) for 1ZY7 Structure Factors (627 Kb) Retrieve 1ZY7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZY7 from S2C, [Save to disk] Re-refined 1zy7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZY7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZY7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZY7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zy7_B] [1zy7] [1zy7_A] SWISS-PROT database: [P78563] Domain organization of [RED1_HUMAN] by SWISSPFAM Domain found in 1ZY7: [ADEAMc ] by SMART

Other resources with information on 1ZY7

Community annotation for 1ZY7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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