OCA Atlas for 1ZYR

1ZYR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, STD, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, N
L, A, B, K
M, C
O, E
P, F	bacterial sigma factor activ...

Primary reference

Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation., Tuske S, Sarafianos SG, Wang X, Hudson B, Sineva E, Mukhopadhyay J, Birktoft JJ, Leroy O, Ismail S, Clark AD Jr, Dharia C, Napoli A, Laptenko O, Lee J, Borukhov S, Ebright RH, Arnold E, Cell 2005 Aug 26;122(4):541-52. PMID:16122422

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1076 Kb) [Save to disk]

Biological Unit Coordinates (1zyr.pdb1.gz) 539 Kb

Biological Unit Coordinates (1zyr.pdb2.gz) 541 Kb

LPC: Ligand-Protein Contacts for 1ZYR

CSU: Contacts of Structural Units for 1ZYR

Likely Quarternary Molecular Structure file(s) for 1ZYR

Structure Factors (1248 Kb)

Retrieve 1ZYR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1ZYR from S2C, [Save to disk]

View 1ZYR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zyr] [1zyr_A] [1zyr_B] [1zyr_C] [1zyr_D] [1zyr_E] [1zyr_F] [1zyr_K] [1zyr_L] [1zyr_M] [1zyr_N] [1zyr_O] [1zyr_P]

SWISS-PROT database: [Q5SKW1] [Q5SHR6] [Q8RQE9] [Q8RQE8] [Q8RQE7]

Domains found in 1ZYR: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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