1ZZJ Structural Protein Dna date Jun 14, 2005
title Structure Of The Third Kh Domain Of Hnrnp K In Complex With Ssdna
authors P.H.Backe, A.C.Messias, R.B.Ravelli, M.Sattler, S.Cusack
compound source
Molecule: 5'-D(Tptpcpcpcpcptpcpcpcpcpaptptpt
Chain: D
Engineered: Yes
Synthetic: Yes

Molecule: Heterogeneous Nuclear Ribonucleoprotein K
Chain: A, B, C
Fragment: Kh3 Domain
Synonym: Hnrnp K, Transformation Up-Regulated Nuclear Prote
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 31 2 1
R_factor 0.210 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.008 54.008 149.656 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceX-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids., Backe PH, Messias AC, Ravelli RB, Sattler M, Cusack S, Structure (Camb) 2005 Jul;13(7):1055-67. PMID:16004877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1zzj.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1ZZJ
  • Likely Quarternary Molecular Structure file(s) for 1ZZJ
  • Structure Factors (193 Kb)
  • Retrieve 1ZZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZZJ from S2C, [Save to disk]
  • Re-refined 1zzj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZZJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZZJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zzj_A] [1zzj_C] [1zzj] [1zzj_D] [1zzj_B]
  • SWISS-PROT database: [P61978]
  • Domain organization of [HNRPK_HUMAN] by SWISSPFAM
  • Domain found in 1ZZJ: [KH ] by SMART
  • Other resources with information on 1ZZJ
  • Community annotation for 1ZZJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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