1ZZW Hydrolase date Jun 14, 2005
title Crystal Structure Of Catalytic Domain Of Human Map Kinase Phosphatase 5
authors D.G.Jeong, T.S.Yoon, J.H.Kim, M.Y.Shim, S.K.Jeong, J.H.Son, S.E.Ryu, S.J.Kim
compound source
Molecule: Dual Specificity Protein Phosphatase 10
Chain: A, B
Fragment: Catalytic Domain
Synonym: Mitogen-Activated Protein Kinase Phosphatase 5, Map Kinase Phosphatase 5, Mkp-5;
Ec: 3.1.3.48, 3.1.3.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1
R_factor 0.193 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.533 41.073 55.569 95.35 99.81 117.35
method X-Ray Diffractionresolution 1.60 Å
ligand EDO, SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
note 1ZZW is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of the Catalytic Domain of Human MAP Kinase Phosphatase 5: Structural Insight into Constitutively Active Phosphatase., Jeong DG, Yoon TS, Kim JH, Shim MY, Jung SK, Son JH, Ryu SE, Kim SJ, J Mol Biol. 2006 Jul 28;360(5):946-55. Epub 2006 Jun 9. PMID:16806267
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1zzw.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (1zzw.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1ZZW
  • CSU: Contacts of Structural Units for 1ZZW
  • Likely Quarternary Molecular Structure file(s) for 1ZZW
  • Structure Factors (283 Kb)
  • Retrieve 1ZZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZZW from S2C, [Save to disk]
  • Re-refined 1zzw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZZW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZZW, from MSDmotif at EBI
  • Fold representative 1zzw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zzw_B] [1zzw_A] [1zzw]
  • SWISS-PROT database: [Q9Y6W6]
  • Domain organization of [DUS10_HUMAN] by SWISSPFAM
  • Domain found in 1ZZW: [DSPc ] by SMART
  • Other resources with information on 1ZZW
  • Community annotation for 1ZZW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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