1A5Z	Oxidoreductase	date	Feb 18, 1998
title	Lactate Dehydrogenase From Thermotoga Maritima (Tmldh)
authors	G.Auerbach, R.Ostendorp, L.Prade, I.Korndoerfer, T.Dams, R.Huber, R.Jaenicke
compound		source
Molecule: L-Lactate Dehydrogenase Chain: A Ec: 1.1.1.27 Engineered: Yes		Organism_scientific: Thermotoga Maritima Organism_taxid: 2336 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Bacterium
symmetry	Space Group: I 41 2 2	R_factor 0.200 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.480 105.480 187.700 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CD, FBP, NAD, OXM	enzyme	Oxidoreductase E.C.1.1.1.27 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Lactate dehydrogenase from the hyperthermophilic bacterium thermotoga maritima: the crystal structure at 2.1 A resolution reveals strategies for intrinsic protein stabilization., Auerbach G, Ostendorp R, Prade L, Korndorfer I, Dams T, Huber R, Jaenicke R, Structure 1998 Jun 15;6(6):769-81. PMID:9655830

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (1a5z.pdb1.gz) 225 Kb LPC: Ligand-Protein Contacts for 1A5Z CSU: Contacts of Structural Units for 1A5Z Likely Quarternary Molecular Structure file(s) for 1A5Z Retrieve 1A5Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1A5Z from S2C, [Save to disk]

View 1A5Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1A5Z

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1A5Z, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1a5z_2, region 164-333 [Jmol] [rasmolscript] [script source]     - Domain d1a5z_1, region 22-163 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1a5z] [1a5z_A] SWISS-PROT database: [P16115] Domain organization of [LDH_THEMA] by SWISSPFAM

Other resources with information on 1A5Z

Community annotation for 1A5Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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