1AA5 Antibiotic date Jan 23, 1997
title Vancomycin
authors P.J.Loll, A.E.Bevivino, B.D.Korty, P.H.Axelsen
compound source
Molecule: Vancomycin
Chain: A, B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Amycolatopsis Orientalis
Organism_taxid: 31958
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.450 28.450 65.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.89 Å
ligand 3FG, ACY, BGC, CL, GHP, MLU, OMY, OMZ, RER enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1aa5.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1AA5
  • CSU: Contacts of Structural Units for 1AA5
  • Likely Quarternary Molecular Structure file(s) for 1AA5
  • Structure Factors (132 Kb)
  • Retrieve 1AA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AA5 from S2C, [Save to disk]
  • Re-refined 1aa5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AA5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AA5, from MSDmotif at EBI
  • Fold representative 1aa5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aa5_B] [1aa5_A] [1aa5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1AA5
  • Community annotation for 1AA5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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