1AKE Transferase(Phosphotransferase) date Nov 08, 1991
title Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State
authors C.W.Mueller, G.E.Schulz
compound source
Molecule: Adenylate Kinase
Chain: A, B
Ec: 2.7.4.3
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 2 21
R_factor 0.196 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.200 79.800 85.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand AP5 enzyme Transferase E.C.2.7.4.3 BRENDA
related structures by homologous chain: 1ANK, 1E4V
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • adenylate kinase activity
  • nucleoside diphosphate kinas...


    • Primary referenceStructure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state., Muller CW, Schulz GE, J Mol Biol 1992 Mar 5;224(1):159-77. PMID:1548697
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1ake.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (1ake.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1AKE
  • CSU: Contacts of Structural Units for 1AKE
  • Likely Quarternary Molecular Structure file(s) for 1AKE
  • Structure Factors (236 Kb)
  • Retrieve 1AKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AKE from S2C, [Save to disk]
  • Re-refined 1ake structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1AKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AKE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AKE, from MSDmotif at EBI
  • Genome occurence of 1AKE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1akea1, region A:1-121,A:157-214 [Jmol] [rasmolscript] [script source]
        - Domain d1akea2, region A:122-156 [Jmol] [rasmolscript] [script source]
        - Domain d1akeb1, region B:1-121,B:157-214 [Jmol] [rasmolscript] [script source]
        - Domain d1akeb2, region B:122-156 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ake] [1ake_B] [1ake_A]
  • SWISS-PROT database: [P69441]
  • Domain organization of [KAD_ECOLI] by SWISSPFAM
    • Other resources with information on 1AKE
  • Community annotation for 1AKE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1AKE from the Database of Macromolecular Movements.
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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