1AO1	Dna	date	Jul 16, 1997
title	Interactions Of Deglycosylated Cobalt(III)-Pepleomycin With Dna, Nmr, Minimized Average Structure
authors	J.Caceres-Cortes, H.Sugiyama, K.Ikudome, I.Saito, A.H.J.Wang
compound		source
Molecule: Dna (5'-D(Cpgptpapcpg)-3') Chain: A, B Engineered: Yes Other_details: Deglycosylated Pepleomycin Is A Dna Cleaving Agent With Antitumor Activity		Synthetic: Yes
method	Solution NMR
ligand	PL1	enzyme
Primary reference	Interactions of deglycosylated cobalt(III)-pepleomycin (green form) with DNA based on NMR structural studies,., Caceres-Cortes J, Sugiyama H, Ikudome K, Saito I, Wang AH, Biochemistry 1997 Aug 19;36(33):9995-10005. PMID:9254594

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk] LPC: Ligand-Protein Contacts for 1AO1 CSU: Contacts of Structural Units for 1AO1 Original NMR restraints for 1AO1 from PDB Retrieve 1AO1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1AO1 from S2C, [Save to disk]

View 1AO1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1AO1

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1AO1, from MSDmotif at EBI Fold representative 1ao1 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ao1_A] [1ao1_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 1AO1 with the sequences similar proteins can be viewed for 1AO1's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 1AO1

Community annotation for 1AO1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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