1AOD Hydrolase date Jul 02, 1997
title Phosphatidylinositol-Specific Phospholipase C From Listeria Monocytogenes
authors D.W.Heinz, J.Moser
compound source
Molecule: Phosphatidylinositol-Specific Phospholipase C
Chain: A
Synonym: Pi-Plc
Ec: 3.1.4.10
Engineered: Yes
Other_details: Bound Myo-Inositol In Active Site
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 1639
Strain: Egd Serotype 12a
Cell_line: Bl21
Cellular_location: Secreted Into Medium
Gene: Plca
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plca
Expression_system_gene: Plca Deletion Variant
symmetry Space Group: P 31 2 1
R_factor 0.158 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.100 82.100 92.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand INS enzyme Hydrolase E.C.3.1.4.10 BRENDA
related structures by homologous chain: 2PLC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the phosphatidylinositol-specific phospholipase C from the human pathogen Listeria monocytogenes., Moser J, Gerstel B, Meyer JE, Chakraborty T, Wehland J, Heinz DW, J Mol Biol 1997 Oct 17;273(1):269-82. PMID:9367761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1aod.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1AOD
  • CSU: Contacts of Structural Units for 1AOD
  • Likely Quarternary Molecular Structure file(s) for 1AOD
  • Structure Factors (261 Kb)
  • Retrieve 1AOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AOD from S2C, [Save to disk]
  • Re-refined 1aod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AOD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AOD, from MSDmotif at EBI
  • Genome occurence of 1AOD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1aod__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aod] [1aod_A]
  • SWISS-PROT database: [P34024]
  • Domain organization of [PLC_LISMO] by SWISSPFAM
  • Domain found in 1AOD: [PLCXc ] by SMART
  • Other resources with information on 1AOD
  • Community annotation for 1AOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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