1AUL Dna date Aug 29, 1997
title Solution Structure Of A Highly Stable Dna Duplex Conjugated To A Minor Groove Binder, Nmr, Minimized Average Structure
authors S.Kumar, M.W.Reed, H.B.Gamper Junior, V.V.Gorn, E.A.Lukhtanov, M.Foti, J.West, R.B.Meyer Junior, B.I.Schweitzer
compound source
Molecule: Dna (5'-D(Pthxpgpaptptpaptpcptpg)-3')
Chain: A
Engineered: Yes
Other_details: Tripeptide Cdpi3 Is Covalently Linked To The T1 Dna Residue With A Hexamethylene Linker;
Synthetic: Yes
Other_details: Cdpi3 Covalently Linked To 5' End Of Dna Strand A With A Hexamethylene Linker;

Molecule: Dna (5'-D(Cpapgpaptpapaptpcpa)-3')
Chain: B
Engineered: Yes
Other_details: Tripeptide Cdpi3 Is Covalently Linked To The T1 Dna Residue With A Hexamethylene Linker

Synthetic: Yes
Other_details: Cdpi3 Covalently Linked To 5' End Of Dna Strand A With A Hexamethylene Linker
methodSolution NMR
ligand THX enzyme
Primary referenceSolution structure of a highly stable DNA duplex conjugated to a minor groove binder., Kumar S, Reed MW, Gamper HB Jr, Gorn VV, Lukhtanov EA, Foti M, West J, Meyer RB Jr, Schweitzer BI, Nucleic Acids Res 1998 Feb 1;26(3):831-8. PMID:9443977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1AUL
  • CSU: Contacts of Structural Units for 1AUL
  • Retrieve 1AUL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AUL from S2C, [Save to disk]
  • View 1AUL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AUL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AUL, from MSDmotif at EBI
  • Fold representative 1aul from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aul_A] [1aul_B] [1aul]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1AUL
  • Community annotation for 1AUL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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