1BFW Viral Protein date May 22, 1998
title Retro-Inverso Analogue Of The G-H Loop Of Vp1 In Foot-And-Mo Disease (Fmd) Virus, Nmr, 10 Structures
authors M.C.Petit, N.Benkirane, G.Guichard, A.Phan Chan Du, M.T.Cung, J.P S.Muller
compound source
Molecule: Vp1 Protein
Chain: A
Fragment: The Major Immunogen Region, Residues 141-159
Engineered: Yes
Other_details: Retro-Inverso Peptide Corresponding To The M Immunogen Region Of The Foot-And-Mouth-Disease Virus Capsid

methodSolution NMR
ligand DAL, DAR, DAS, DGN, DLE, DPN, DPR, DSN, DVA, LML, NH2 enzyme
Primary referenceSolution structure of a retro-inverso peptide analogue mimicking the foot-and-mouth disease virus major antigenic site. Structural basis for its antigenic cross-reactivity with the parent peptide., Petit MC, Benkirane N, Guichard G, Du AP, Marraud M, Cung MT, Briand JP, Muller S, J Biol Chem 1999 Feb 5;274(6):3686-92. PMID:9920919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1bfw.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 1BFW
  • CSU: Contacts of Structural Units for 1BFW
  • Original NMR restraints for 1BFW from PDB
  • Retrieve 1BFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BFW from S2C, [Save to disk]
  • View 1BFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BFW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BFW, from MSDmotif at EBI
  • Fold representative 1bfw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bfw_A] [1bfw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1BFW
  • Community annotation for 1BFW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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