1CW9 Dna date Aug 26, 1999
title Dna Decamer With An Engineered Crosslink In The Minor Groove
authors D.M.F.Van Aalten, D.A.Erlanson, G.L.Verdine, L.Joshua-Tor
compound source
Molecule: 5'-D(Cpcpapgp(G47)Pcpcptpgpg)-3'
Chain: A, B, C, D
Engineered: Yes
 Synthetic: Yes
Other_details: Crosslinked Dna Was Synthesized By The Conve Nucleoside Approach
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.435 43.180 72.412 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CA, G47 enzyme
Primary referenceA structural snapshot of base-pair opening in DNA., van Aalten DM, Erlanson DA, Verdine GL, Joshua-Tor L, Proc Natl Acad Sci U S A 1999 Oct 12;96(21):11809-14. PMID:10518532
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1cw9.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (1cw9.pdb2.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 1CW9
  • CSU: Contacts of Structural Units for 1CW9
  • Likely Quarternary Molecular Structure file(s) for 1CW9
  • Retrieve 1CW9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CW9 from S2C, [Save to disk]
    • View 1CW9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CW9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CW9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cw9_D] [1cw9_C] [1cw9] [1cw9_B] [1cw9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1CW9
  • Community annotation for 1CW9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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