1DP7	Transcription Dna	date	Dec 23, 1999
title	Cocrystal Structure Of Rfx-Dbd In Complex With Its Cognate X Binding Site
authors	K.S.Gajiwala, H.Chen, F.Cornille, B.P.Roques, W.Reith, B.Mach, S.K
compound		source
Molecule: Dna (5'-D(Cpgp(Bru)Ptpapcpcpap(Bru) Pgpgptpapapcpg)-3'); Chain: D Fragment: X-Box Engineered: Yes		Synthetic: Yes
Molecule: Mhc Class II Transcription Factor Hrfx1 Chain: P Fragment: Dna Binding Domain Synonym: Regulatory Factor X Engineered: Yes Mutation: Yes		Synthetic: Yes Other_details: Sequence Taken From Human Mhc Class II Trans Factor
symmetry	Space Group: C 1 2 1	R_factor 0.192 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.843 42.752 52.277 90.00 109.21 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	BRU, EDO, PEG	enzyme
Gene Ontology	Chain Function Process Component P
Primary reference	Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding., Gajiwala KS, Chen H, Cornille F, Roques BP, Reith W, Mach B, Burley SK, Nature 2000 Feb 24;403(6772):916-21. PMID:10706293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (1dp7.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 1DP7 CSU: Contacts of Structural Units for 1DP7 Likely Quarternary Molecular Structure file(s) for 1DP7 Structure Factors (336 Kb) Retrieve 1DP7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DP7 from S2C, [Save to disk] Re-refined 1dp7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DP7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DP7

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1DP7 1DP7D 1DP7P from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DP7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dp7p_, region P [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dp7] [1dp7_D] [1dp7_P] SWISS-PROT database: [P22670] Domain organization of [RFX1_HUMAN] by SWISSPFAM

Other resources with information on 1DP7

Community annotation for 1DP7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---