1E6I	Gene Regulation	date	Aug 18, 2000
title	Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
authors	D.J.Owen, A.A.Travers, P.R.Evans
compound		source
Molecule: Transcriptional Activator Gcn5 Chain: A Fragment: Bromodomain Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_taxid: 4932 Gene: Gcn5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet30a
Molecule: Histone H4 Chain: P Fragment: Acetylated Tail, Residues 16-30 Other_details: Lysine 16 Is Acetylated On Nz		Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae Organism_taxid: 4932
symmetry	Space Group: C 2 2 21	R_factor 0.187 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.680 71.920 89.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.87 Å
ligand	ALY	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p., Owen DJ, Ornaghi P, Yang JC, Lowe N, Evans PR, Ballario P, Neuhaus D, Filetici P, Travers AA, EMBO J 2000 Nov 15;19(22):6141-9. PMID:11080160

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (1e6i.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 1E6I CSU: Contacts of Structural Units for 1E6I Likely Quarternary Molecular Structure file(s) for 1E6I Structure Factors (266 Kb) Retrieve 1E6I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1E6I from S2C, [Save to disk] Re-refined 1e6i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1E6I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1E6I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1E6I, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1e6ia_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1e6i_P] [1e6i_A] [1e6i] SWISS-PROT database: [Q03330] Domain organization of [GCN5_YEAST] by SWISSPFAM Domain found in 1E6I: [BROMO ] by SMART

Other resources with information on 1E6I

Community annotation for 1E6I at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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