1FXD Electron Transfer(Iron-Sulfur) date Apr 08, 1991
title Refined Crystal Structure Of Ferredoxin II From Desulfovibri 1.7 Angstroms
authors C.R.Kissinger, L.C.Sieker, E.T.Adman, L.H.Jensen
compound source
Molecule: Ferredoxin II
Chain: A
Engineered: Yes
Organism_scientific: Desulfovibrio Gigas
Organism_taxid: 879
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.870 45.280 26.470 90.00 104.70 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand F3S, SCH enzyme
related structures by homologous chain: 1F2G
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceRefined crystal structure of ferredoxin II from Desulfovibrio gigas at 1.7 A., Kissinger CR, Sieker LC, Adman ET, Jensen LH, J Mol Biol 1991 Jun 20;219(4):693-715. PMID:2056535
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1fxd.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1FXD
  • CSU: Contacts of Structural Units for 1FXD
  • Likely Quarternary Molecular Structure file(s) for 1FXD
  • Retrieve 1FXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FXD from S2C, [Save to disk]
  • View 1FXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FXD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FXD, from MSDmotif at EBI
  • Genome occurence of 1FXD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fxd__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1fxd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fxd] [1fxd_A]
  • SWISS-PROT database: [P00209]
  • Domain organization of [FER_DESGI] by SWISSPFAM
  • Other resources with information on 1FXD
  • Community annotation for 1FXD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FXD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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