1FYI Dna date Sep 30, 2000
title 11-Mer Dna Duplex Containing A 2'-Deoxyaristeromycin 8-Oxo- Guanine Base Pair;
authors S.Smirnov, F.Johnson, C.De Los Santos
compound source
Molecule: 5'-D(Cpapgptpgp(2ar)Pgptpcpapc)-3'
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Gptpgpapcp(8og)Pcpapcptpg)-3'
Chain: B
Engineered: Yes

Synthetic: Yes
methodSolution NMR
ligand 2AR, 8OG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1FYI
  • CSU: Contacts of Structural Units for 1FYI
  • Original NMR restraints for 1FYI from PDB
  • Retrieve 1FYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FYI from S2C, [Save to disk]
  • View 1FYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FYI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FYI, from MSDmotif at EBI
  • Fold representative 1fyi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fyi_A] [1fyi_B] [1fyi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1FYI
  • Community annotation for 1FYI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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