1G42 Hydrolase date Oct 26, 2000
title Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene Hydrolas From Sphingomonas Paucimobilis Complexed With 1,2-Dichlorop
authors A.J.Oakley, Z.Prokop, M.Bohac, J.Kmunicek, T.Jedlicka, M.Monincov Smatanova, Y.Nagata, J.Damborsky, M.C.J.Wilce
compound source
Molecule: 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene Hydrolase
Chain: A
Synonym: 1,4-Tcdn Chlorohydrolase
Ec: 3.8.1.-
Engineered: Yes
Organism_scientific: Sphingomonas Paucimobilis
Organism_taxid: 13689
Gene: Linb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hb101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmlbh6
symmetry Space Group: P 21 21 2
R_factor 0.167 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.800 72.000 73.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 2MR, ACT, CA, CL, CP2 enzyme Hydrolase E.C.3.8.1 BRENDA
related structures by homologous chain: 1G5F, 1K5P
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition., Oakley AJ, Prokop Z, Bohac M, Kmunicek J, Jedlicka T, Monincova M, Kuta-Smatanova I, Nagata Y, Damborsky J, Wilce MC, Biochemistry 2002 Apr 16;41(15):4847-55. PMID:11939779
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1g42.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1G42
  • CSU: Contacts of Structural Units for 1G42
  • Likely Quarternary Molecular Structure file(s) for 1G42
  • Structure Factors (186 Kb)
  • Retrieve 1G42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G42 from S2C, [Save to disk]
  • Re-refined 1g42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G42
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G42, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g42a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g42] [1g42_A]
  • SWISS-PROT database: [P51698]
  • Domain organization of [LINB_PSEPA] by SWISSPFAM
  • Other resources with information on 1G42
  • Community annotation for 1G42 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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