1G5L Dna date Nov 01, 2000
title Co(III)-Bleomycin-Ooh Bound To An Oligonucleotide Containing A Phosphoglycolate Lesion
authors S.T.Hoehn, H.D.Junker, R.C.Bunt, C.J.Turner, J.Stubbe
compound source
Molecule: 5'-D(Cpcpapapapg)-3'
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Papcptpgpgpg)-3'
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Cpcpcpapgptpapcptptptpgpg)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
methodSolution NMR
ligand 3CO, BLB, O, PEO, PGA enzyme
Primary referenceSolution structure of Co(III)-bleomycin-OOH bound to a phosphoglycolate lesion containing oligonucleotide: implications for bleomycin-induced double-strand DNA cleavage., Hoehn ST, Junker HD, Bunt RC, Turner CJ, Stubbe J, Biochemistry 2001 May 22;40(20):5894-905. PMID:11352724
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1G5L
  • CSU: Contacts of Structural Units for 1G5L
  • Retrieve 1G5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G5L from S2C, [Save to disk]
  • View 1G5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G5L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1G5L, from MSDmotif at EBI
  • Fold representative 1g5l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g5l_B] [1g5l] [1g5l_C] [1g5l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1G5L
  • Community annotation for 1G5L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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