1GMK Antibiotic date Jul 09, 1996
title Gramicidinkscn Complex
authors D.A.Doyle, B.A.Wallace
compound source
Molecule: Gramicidin A
Chain: A, B, C, D
Synonym: Valyl Gramicidin
 Organism_scientific: Brevibacillus Brevis
Organism_taxid: 1393
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.060 51.800 31.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DLE, DVA, ETA, FVA, K, MOH, SCN enzyme
Primary referenceCrystal structure of the gramicidin/potassium thiocyanate complex., Doyle DA, Wallace BA, J Mol Biol 1997 Mar 14;266(5):963-77. PMID:9086274
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1gmk.pdb1.gz) 8 Kb
  • Biological Unit Coordinates (1gmk.pdb2.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1GMK
  • CSU: Contacts of Structural Units for 1GMK
  • Likely Quarternary Molecular Structure file(s) for 1GMK
  • Retrieve 1GMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GMK from S2C, [Save to disk]
    • View 1GMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GMK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GMK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gmka_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gmkb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gmkc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1gmkd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gmk_A] [1gmk_D] [1gmk] [1gmk_C] [1gmk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1GMK
  • Community annotation for 1GMK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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