1H15 Immune System Transferase date Jul 02, 2002
title X-Ray Crystal Structure Of Hla-Dra10101drb50101 Complexed Peptide From Epstein Barr Virus Dna Polymerase
authors H.Lang, H.Jacobsen, S.Ikemizu, C.Andersson, K.Harlos, L.Madsen, P. L.Sondergaard, A.Svejgaard, K.Wucherpfennig, D.I.Stuart, J.I.Be E.Y.Jones, L.Fugger
compound source
Molecule: Hla Class II Histocompatibility Antigen, Dr Alpha
Chain: A, D
Fragment: Alpha Chain, Residues 26-207
Synonym: Hla-Dra, Major Histocompatibility Complex A Chain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: S2

Molecule: Hla Class II Histocompatibility Antigen, Dr Beta
Chain: B, E
Fragment: Beta Chain, Residues 30-219
Synonym: Hla-Drb1, Major Histocompatibility Complex B Chain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: S2

Molecule: Dna Polymerase
Chain: C, F
Fragment: Residues 628-641
Synonym: Epstein Barr Vius (Ebv) Dna Polymerase
Ec: 2.7.7.7
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Herpesvirus 4
Organism_common: Epstein Barr Virus
Organism_taxid: 10376
Other_details: The Protein Occurs Naturally In Ebv But The Was Synthesised Chemically
symmetry Space Group: P 65
R_factor 0.256 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
179.244 179.244 92.884 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand NAG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceA functional and structural basis for TCR cross-reactivity in multiple sclerosis., Lang HL, Jacobsen H, Ikemizu S, Andersson C, Harlos K, Madsen L, Hjorth P, Sondergaard L, Svejgaard A, Wucherpfennig K, Stuart DI, Bell JI, Jones EY, Fugger L, Nat Immunol 2002 Oct;3(10):940-3. PMID:12244309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (1h15.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (1h15.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1H15
  • CSU: Contacts of Structural Units for 1H15
  • Likely Quarternary Molecular Structure file(s) for 1H15
  • Structure Factors (326 Kb)
  • Retrieve 1H15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H15 from S2C, [Save to disk]
  • Re-refined 1h15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H15
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H15, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h15a2, region A:3-81 [Jmol] [rasmolscript] [script source]
        - Domain d1h15a1, region A:82-182 [Jmol] [rasmolscript] [script source]
        - Domain d1h15b2, region B:2-92 [Jmol] [rasmolscript] [script source]
        - Domain d1h15b1, region B:93-190 [Jmol] [rasmolscript] [script source]
        - Domain d1h15d2, region D:3-81 [Jmol] [rasmolscript] [script source]
        - Domain d1h15d1, region D:82-182 [Jmol] [rasmolscript] [script source]
        - Domain d1h15e2, region E:2-92 [Jmol] [rasmolscript] [script source]
        - Domain d1h15e1, region E:93-190 [Jmol] [rasmolscript] [script source]
  • Fold representative 1h15 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h15_E] [1h15_C] [1h15_A] [1h15_F] [1h15_D] [1h15_B] [1h15]
  • SWISS-PROT database: [P03198] [P01903] [Q30154]
  • Domain organization of [DPOL_EBVB9] [DRA_HUMAN] [DRB5_HUMAN] by SWISSPFAM
  • Domains found in 1H15: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART
  • Other resources with information on 1H15
  • Community annotation for 1H15 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science