1H1P Transferase date Jul 21, 2002
title Structure Of Human Thr160-Phospho Cdk2cyclin A Complexed With The Inhibitor Nu2058
authors T.G.Davies, M.E.M.Noble, J.A.Endicott, L.N.Johnson
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: Cyclin-Dependent Kinase 2, P33 Protein Kinase
Ec: 2.7.1.-
Engineered: Yes
Other_details: Phosphorylated On Thr160
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cyclin A2
Chain: B, D
Synonym: Cyclin A, Cyclin A3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.222 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.030 193.830 157.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CMG, TPO BindingDB enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1H0W, 1H1S, 1OI9
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure-based design of a potent purine-based cyclin-dependent kinase inhibitor., Davies TG, Bentley J, Arris CE, Boyle FT, Curtin NJ, Endicott JA, Gibson AE, Golding BT, Griffin RJ, Hardcastle IR, Jewsbury P, Johnson LN, Mesguiche V, Newell DR, Noble ME, Tucker JA, Wang L, Whitfield HJ, Nat Struct Biol 2002 Oct;9(10):745-9. PMID:12244298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (1h1p.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (1h1p.pdb2.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 1H1P
  • CSU: Contacts of Structural Units for 1H1P
  • Likely Quarternary Molecular Structure file(s) for 1H1P
  • Structure Factors (793 Kb)
  • Retrieve 1H1P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H1P from S2C, [Save to disk]
  • Re-refined 1h1p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H1P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H1P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H1P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h1pa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h1pb1, region B:175-309 [Jmol] [rasmolscript] [script source]
        - Domain d1h1pb2, region B:310-432 [Jmol] [rasmolscript] [script source]
        - Domain d1h1pc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1h1pd1, region D:175-309 [Jmol] [rasmolscript] [script source]
        - Domain d1h1pd2, region D:310-432 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h1p_C] [1h1p_B] [1h1p] [1h1p_D] [1h1p_A]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 1H1P: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 1H1P
  • Community annotation for 1H1P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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