1IVH Oxidoreductase date May 15, 1997
title Structure Of Human Isovaleryl-Coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity
authors K.A.Tiffany, D.L.Roberts, M.Wang, R.Paschke, A.W.A.Mohsen, J.Vockley, J.J.P.Kim
compound source
Molecule: Isovaleryl-Coa Dehydrogenase
Chain: A, B, C, D
Ec: 1.3.99.10
Engineered: Yes
Other_details: Each Subunit Contains One Non-Covalently Bound Fad Molecule And One Non-Covalently Bound Coa Per Sulfide Molecule
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Organelle: Mitochondria
Gene: Ivd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm105
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_vector: Pkk233-3
Expression_system_plasmid: Pkmhivd
Other_details: The Cdna Was Altered To Accommodate Escherichia Coli Codon Usage In Order To Achieve A High Level Of Expression. The Molecule Was Then Cloned,
Expressed, And Purified As Described In\: Mohsen, A.W. And
Vockley, J. (1995) Biochemistry, 34\: 10146-10152
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.000 97.700 181.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand COS, FAD enzyme Oxidoreductase E.C.1.3.99.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of human isovaleryl-CoA dehydrogenase at 2.6 A resolution: structural basis for substrate specificity,., Tiffany KA, Roberts DL, Wang M, Paschke R, Mohsen AW, Vockley J, Kim JJ, Biochemistry 1997 Jul 15;36(28):8455-64. PMID:9214289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]
  • Biological Unit Coordinates (1ivh.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 1IVH
  • CSU: Contacts of Structural Units for 1IVH
  • Likely Quarternary Molecular Structure file(s) for 1IVH
  • Retrieve 1IVH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IVH from S2C, [Save to disk]
  • View 1IVH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IVH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IVH, from MSDmotif at EBI
  • Genome occurence of 1IVH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ivha1, region A:242-392 [Jmol] [rasmolscript] [script source]
        - Domain d1ivha2, region A:6-241 [Jmol] [rasmolscript] [script source]
        - Domain d1ivhb1, region B:242-392 [Jmol] [rasmolscript] [script source]
        - Domain d1ivhb2, region B:6-241 [Jmol] [rasmolscript] [script source]
        - Domain d1ivhc1, region C:242-392 [Jmol] [rasmolscript] [script source]
        - Domain d1ivhc2, region C:6-241 [Jmol] [rasmolscript] [script source]
        - Domain d1ivhd1, region D:242-392 [Jmol] [rasmolscript] [script source]
        - Domain d1ivhd2, region D:6-241 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ivh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ivh_D] [1ivh_B] [1ivh_A] [1ivh_C] [1ivh]
  • SWISS-PROT database: [P26440]
  • Domain organization of [IVD_HUMAN] by SWISSPFAM
  • Other resources with information on 1IVH
  • Community annotation for 1IVH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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