1JZV Crystal structure of a bulged RNA from the SL2 stem-loop of the HIV-1 psi-RNA date
authors Xiong, Y., Sudarsanakumar, C., Deng, J., Pan, B., Sundaralingam, M.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 5BU, 5IC, MG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1jzv.pdb1.gz) 8 Kb
  • Biological Unit Coordinates (1jzv.pdb2.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 1JZV
  • CSU: Contacts of Structural Units for 1JZV
  • Likely Quarternary Molecular Structure file(s) for 1JZV
  • Structure Factors (139 Kb)
  • Retrieve 1JZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JZV from S2C, [Save to disk]
  • Re-refined 1jzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JZV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JZV, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jzv_B] [1jzv] [1jzv_A] [1jzv_C] [1jzv_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1JZV
  • Community annotation for 1JZV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science