1JZY Ribosome date Sep 17, 2001
title Structural Basis For The Interaction Of Antibiotics With The Transferase Center In Eubacteria
authors F.Schluenzen, R.Zarivach, J.Harms, A.Bashan, A.Tocilj, R.Albrecht A.Yonath, F.Franceschi
compound source
Molecule: 23s Rrna
Chain: A
 Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L4
Chain: K
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L22
Chain: L
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L32
Chain: M
Synonym: 50s Ribosomal Protein L32
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
symmetry Space Group: I 2 2 2
R_factor 0.268 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.200 410.000 695.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand ERY, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
K


L


M


Primary referenceStructural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria., Schlunzen F, Zarivach R, Harms J, Bashan A, Tocilj A, Albrecht R, Yonath A, Franceschi F, Nature 2001 Oct 25;413(6858):814-21. PMID:11677599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1037 Kb) [Save to disk]
  • Biological Unit Coordinates (1jzy.pdb1.gz) 1032 Kb
  • LPC: Ligand-Protein Contacts for 1JZY
  • CSU: Contacts of Structural Units for 1JZY
  • Likely Quarternary Molecular Structure file(s) for 1JZY
  • Retrieve 1JZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JZY from S2C, [Save to disk]
    • View 1JZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JZY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JZY, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jzya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jzyk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1jzyl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1jzym_, region M [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jzy_L] [1jzy] [1jzy_A] [1jzy_M] [1jzy_K]
  • SWISS-PROT database: [Q9RXJ7] [P49228] [Q9RXK1]
  • Domain organization of [RL22_DEIRA] [RL32_DEIRA] [RL4_DEIRA] by SWISSPFAM
    • Other resources with information on 1JZY
  • Community annotation for 1JZY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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