1K29 Dna date Sep 26, 2001
title Solution Structure Of A Dna Duplex Containing M1g Opposite A Pair Deletion
authors N.C.Schnetz-Boutaud, S.Saleh, L.J.Marnett, M.P.Stone
compound source
Molecule: 5'-D(Aptpcpgpcp(M1g)Pcpgpgpcpaptpg)-
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In The Salmon Typhimurium His3052 Gene;

Molecule: 5'-D(Cpaptpgpcpcpgpcpgpapt)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In The Salmon Typhimurium His3052 Gene
methodSolution NMR
ligand M1G enzyme
Primary referenceThe exocyclic 1,N2-deoxyguanosine pyrimidopurinone M1G is a chemically stable DNA adduct when placed opposite a two-base deletion in the (CpG)3 frameshift hotspot of the Salmonella typhimurium hisD3052 gene., Schnetz-Boutaud NC, Saleh S, Marnett LJ, Stone MP, Biochemistry 2001 Dec 25;40(51):15638-49. PMID:11747439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1k29.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1K29
  • CSU: Contacts of Structural Units for 1K29
  • Retrieve 1K29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K29 from S2C, [Save to disk]
    • View 1K29 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K29
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K29, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k29_B] [1k29_A] [1k29]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1K29
  • Community annotation for 1K29 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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