1KOD Rna date Mar 28, 1996
title Rna Aptamer Complexed With Citrulline, Nmr
authors Y.S.Yang, M.Kochoyan, P.Burgstaller, E.Westhof, M.Famulok
compound source
Molecule: Rna (5'-R(Papgpapapgpgpapgpupgpu)-3')
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Rna (5'- R(Papcpgpgpupupapgpgpupcpgpcpu)-3');
Chain: B
Engineered: Yes

Synthetic: Yes
methodSolution NMR
ligand CIR enzyme
Primary referenceStructural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy., Yang Y, Kochoyan M, Burgstaller P, Westhof E, Famulok M, Science 1996 May 31;272(5266):1343-7. PMID:8650546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1KOD
  • CSU: Contacts of Structural Units for 1KOD
  • Retrieve 1KOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KOD from S2C, [Save to disk]
  • View 1KOD in 3D
  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 1KOD
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KOD, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Fold representative 1kod from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kod] [1kod_A] [1kod_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1KOD
  • Community annotation for 1KOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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