1M6P	Receptor	date	Apr 19, 1998
title	Extracytoplasmic Domain Of Bovine Cation-Dependent Mannose 6 Receptor
authors	D.L.Roberts, D.J.Weix, N.M.Dahms, J.J.P.Kim
compound		source
Molecule: Cation-Dependent Mannose-6-Phosphate Receptor Chain: A, B Fragment: Extracytoplasmic Domain Synonym: Cdmpr Engineered: Yes Mutation: Yes		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Cell_line: 5b1-4 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: 5b1-4 Expression_system_vector: Baculovirus
symmetry	Space Group: P 43 21 2	R_factor 0.224 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.641 92.641 85.316 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	M6P, MN BindingDB	enzyme
related structures	by homologous chain: 1C39
Gene Ontology	Chain Function Process Component A, B
Primary reference	Molecular basis of lysosomal enzyme recognition: three-dimensional structure of the cation-dependent mannose 6-phosphate receptor., Roberts DL, Weix DJ, Dahms NM, Kim JJ, Cell 1998 May 15;93(4):639-48. PMID:9604938

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1m6p.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 1M6P CSU: Contacts of Structural Units for 1M6P Likely Quarternary Molecular Structure file(s) for 1M6P Retrieve 1M6P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M6P from S2C, [Save to disk]

View 1M6P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M6P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M6P, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m6pa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1m6pb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m6p_B] [1m6p_A] [1m6p] SWISS-PROT database: [P11456] Domain organization of [MPRD_BOVIN] by SWISSPFAM

Other resources with information on 1M6P

Community annotation for 1M6P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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