1NAH Isomerase date Nov 22, 1995
title Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
authors J.B.Thoden, P.A.Frey, H.M.Holden
compound source
Molecule: Udp-Galactose 4-Epimerase
Chain: A
Synonym: Epimerase
Ec: 5.1.3.2
Engineered: Yes
Other_details: Reduced Form
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3), Plyss
Expression_system_plasmid: Pt7e2
symmetry Space Group: P 32 2 1
R_factor 0.165 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.500 83.500 108.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand EDO, NA, NAD, PEG, UDP enzyme Isomerase E.C.5.1.3.2 BRENDA
related structures by homologous chain: 1A9Y, 1XEL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the oxidized and reduced forms of UDP-galactose 4-epimerase isolated from Escherichia coli., Thoden JB, Frey PA, Holden HM, Biochemistry 1996 Feb 27;35(8):2557-66. PMID:8611559
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1nah.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 1NAH
  • CSU: Contacts of Structural Units for 1NAH
  • Likely Quarternary Molecular Structure file(s) for 1NAH
  • Retrieve 1NAH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NAH from S2C, [Save to disk]
  • View 1NAH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NAH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NAH, from MSDmotif at EBI
  • Genome occurence of 1NAH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nah__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nah] [1nah_A]
  • SWISS-PROT database: [P09147]
  • Domain organization of [GALE_ECOLI] by SWISSPFAM
  • Other resources with information on 1NAH
  • Community annotation for 1NAH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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