1OAD Isomerase date Jan 08, 2003
title Glucose Isomerase From Streptomyces Rubiginosus In P21212 Crystal Form
authors U.A.Ramagopal, M.Dauter, Z.Dauter
compound source
Molecule: Xylose Isomerase
Chain: A, B
Synonym: Glucose Isomerase
Ec: 5.3.1.5
Organism_scientific: Streptomyces Rubiginosus
Organism_taxid: 1929
symmetry Space Group: P 21 21 2
R_factor 0.163 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.450 129.590 78.330 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.5 Å
ligand MG, MN, MPD, MQD, MRD, TRS enzyme Isomerase E.C.5.3.1.5 BRENDA
related structures by homologous chain: 1GW9, 1O1H
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSAD manganese in two crystal forms of glucose isomerase., Ramagopal UA, Dauter M, Dauter Z, Acta Crystallogr D Biol Crystallogr 2003 May;59(Pt 5):868-75. PMID:12777803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (1oad.pdb1.gz) 285 Kb
  • LPC: Ligand-Protein Contacts for 1OAD
  • CSU: Contacts of Structural Units for 1OAD
  • Likely Quarternary Molecular Structure file(s) for 1OAD
  • Structure Factors (2104 Kb)
  • Retrieve 1OAD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OAD from S2C, [Save to disk]
  • Re-refined 1oad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OAD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OAD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1OAD 1OADA 1OADB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OAD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oada_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oadb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oad_A] [1oad_B] [1oad]
  • SWISS-PROT database: [P24300]
  • Domain organization of [XYLA_STRRU] by SWISSPFAM
  • Other resources with information on 1OAD
  • Community annotation for 1OAD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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