1PCJ Isomerase date May 16, 2003
title Enzyme-Ligand Complex Of P. Aeruginosa Pmmpgm
authors C.Regni, P.A.Tipton, L.J.Beamer
compound source
Molecule: Phosphomannomutase
Chain: X
Synonym: Pmm
Ec: 5.4.2.8
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Algc Or Pa5322
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B121(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3-A
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.896 74.307 85.476 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand M1P, SEP, ZN enzyme Isomerase E.C.5.4.2.8 BRENDA
related structures by homologous chain: 1K35, 1PCM
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa., Regni C, Naught L, Tipton PA, Beamer LJ, Structure (Camb) 2004 Jan;12(1):55-63. PMID:14725765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1pcj.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1PCJ
  • CSU: Contacts of Structural Units for 1PCJ
  • Likely Quarternary Molecular Structure file(s) for 1PCJ
  • Structure Factors (217 Kb)
  • Retrieve 1PCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PCJ from S2C, [Save to disk]
  • Re-refined 1pcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PCJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PCJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pcjx2, region X:155-258 [Jmol] [rasmolscript] [script source]
        - Domain d1pcjx3, region X:259-367 [Jmol] [rasmolscript] [script source]
        - Domain d1pcjx4, region X:368-463 [Jmol] [rasmolscript] [script source]
        - Domain d1pcjx1, region X:6-154 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pcj_X] [1pcj]
  • SWISS-PROT database: [P26276]
  • Domain organization of [ALGC_PSEAE] by SWISSPFAM
    • Other resources with information on 1PCJ
  • Community annotation for 1PCJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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