1PHP Kinase date Apr 12, 1994
title Structure Of The Adp Complex Of The 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus At 1.65 Angstroms
authors G.J.Davies, H.C.Watson
compound source
Molecule: 3-Phosphoglycerate Kinase
Chain: A
Ec: 2.7.2.3
Engineered: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.410 73.930 68.570 90.00 99.80 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ADP, MG enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the ADP complex of the 3-phosphoglycerate kinase from Bacillus stearothermophilus at 1.65 A., Davies GJ, Gamblin SJ, Littlechild JA, Dauter Z, Wilson KS, Watson HC, Acta Crystallogr D Biol Crystallogr. 1994 Mar 1;50(Pt 2):202-9. PMID:15299460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1php.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1PHP
  • CSU: Contacts of Structural Units for 1PHP
  • Likely Quarternary Molecular Structure file(s) for 1PHP
  • Structure Factors (185 Kb)
  • Retrieve 1PHP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PHP from S2C, [Save to disk]
  • Re-refined 1php structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PHP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PHP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PHP, from MSDmotif at EBI
  • Genome occurence of 1PHP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1php__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1php from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1php] [1php_A]
  • SWISS-PROT database: [P18912]
  • Domain organization of [PGK_BACST] by SWISSPFAM
  • Other resources with information on 1PHP
  • Community annotation for 1PHP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1PHP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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