1QPD Transferase date May 24, 1999
title Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors
authors X.Zhu, J.L.Kim, P.E.Rose, D.R.Stover, L.M.Toledo, H.Zhao, K.A.Morgenstern
compound source
Molecule: Lck Kinase
Chain: A
Fragment: Catalytic Domain
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Lymphocyte
Cellular_location: Cytoplasm
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell: Lymphocyte
Expression_system_vector: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.200 73.800 91.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PTR, SO4, STU BindingDB enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1QCF, 1QPE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of the lymphocyte-specific kinase Lck in complex with non-selective and Src family selective kinase inhibitors., Zhu X, Kim JL, Newcomb JR, Rose PE, Stover DR, Toledo LM, Zhao H, Morgenstern KA, Structure Fold Des 1999 Jun 15;7(6):651-61. PMID:10404594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1qpd.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1QPD
  • CSU: Contacts of Structural Units for 1QPD
  • Likely Quarternary Molecular Structure file(s) for 1QPD
  • Retrieve 1QPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QPD from S2C, [Save to disk]
  • View 1QPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QPD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QPD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qpda_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1qpd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qpd_A] [1qpd]
  • SWISS-PROT database: [P06239]
  • Domain organization of [LCK_HUMAN] by SWISSPFAM
  • Domain found in 1QPD: [TyrKc ] by SMART
  • Other resources with information on 1QPD
  • Community annotation for 1QPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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