1SCF HUMAN RECOMBINANT STEM CELL FACTOR date
authors Jiang, X., Gurel, O., Langley, K.E., Hendrickson, W.A.
compound source
symmetry
R_factor
R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 1PE, CA, MSE enzyme
related structures by homologous chain: 1EXZ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the active core of human stem cell factor and analysis of binding to its receptor kit., Jiang X, Gurel O, Mendiaz EA, Stearns GW, Clogston CL, Lu HS, Osslund TD, Syed RS, Langley KE, Hendrickson WA, EMBO J 2000 Jul 3;19(13):3192-203. PMID:10880433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1scf.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (1scf.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (1scf.pdb3.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1SCF
  • CSU: Contacts of Structural Units for 1SCF
  • Likely Quarternary Molecular Structure file(s) for 1SCF
  • Retrieve 1SCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SCF from S2C, [Save to disk]
    • View 1SCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SCF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SCF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1scfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1scfb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1scfc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1scfd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1scf_C] [1scf] [1scf_A] [1scf_D] [1scf_B]
  • SWISS-PROT database: [P21583]
  • Domain organization of [SCF_HUMAN] by SWISSPFAM
    • Other resources with information on 1SCF
  • Community annotation for 1SCF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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