1SJK Dna date Jul 22, 1997
title A Duplex Dna With An Abasic Site In A Da Tract, Alpha Form, Minimized Average Structure
authors K.Y.Wang, S.A.Parker, I.Goljer, P.H.Bolton
compound source
Molecule: Dna (5'-D(Cpgpcpapapapapaptpgpcpg)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Cpgpcpaptptporpptptpgpcpg)-
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand ORP enzyme
Primary referenceSolution structure of a duplex DNA with an abasic site in a dA tract., Wang KY, Parker SA, Goljer I, Bolton PH, Biochemistry 1997 Sep 30;36(39):11629-39. PMID:9305952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1sjk.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1SJK
  • CSU: Contacts of Structural Units for 1SJK
  • Original NMR restraints for 1SJK from PDB
  • Retrieve 1SJK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SJK from S2C, [Save to disk]
    • View 1SJK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SJK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SJK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sjk_B] [1sjk] [1sjk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1SJK
  • Community annotation for 1SJK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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