1SPU Oxidoreductase date Nov 13, 1996
title Structure Of Oxidoreductase
authors C.M.Wilmot, S.E.V.Phillips
compound source
Molecule: Copper Amine Oxidase
Chain: A, B
Ec: 1.4.3.6
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Cellular_location: Periplasm
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.460 166.070 79.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, CU, PAQ enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1DYU, 1QAK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCatalytic mechanism of the quinoenzyme amine oxidase from Escherichia coli: exploring the reductive half-reaction., Wilmot CM, Murray JM, Alton G, Parsons MR, Convery MA, Blakeley V, Corner AS, Palcic MM, Knowles PF, McPherson MJ, Phillips SE, Biochemistry 1997 Feb 18;36(7):1608-20. PMID:9048544
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (1spu.pdb1.gz) 248 Kb
  • LPC: Ligand-Protein Contacts for 1SPU
  • CSU: Contacts of Structural Units for 1SPU
  • Likely Quarternary Molecular Structure file(s) for 1SPU
  • Structure Factors (931 Kb)
  • Retrieve 1SPU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SPU from S2C, [Save to disk]
  • Re-refined 1spu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SPU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SPU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SPU, from MSDmotif at EBI
  • Genome occurence of 1SPU's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1spua3, region A:186-300 [Jmol] [rasmolscript] [script source]
        - Domain d1spua1, region A:301-724 [Jmol] [rasmolscript] [script source]
        - Domain d1spua4, region A:7-90 [Jmol] [rasmolscript] [script source]
        - Domain d1spua2, region A:91-185 [Jmol] [rasmolscript] [script source]
        - Domain d1spub3, region B:186-300 [Jmol] [rasmolscript] [script source]
        - Domain d1spub1, region B:301-725 [Jmol] [rasmolscript] [script source]
        - Domain d1spub4, region B:6-90 [Jmol] [rasmolscript] [script source]
        - Domain d1spub2, region B:91-185 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1spu_B] [1spu] [1spu_A]
  • SWISS-PROT database: [P46883]
  • Domain organization of [AMO_ECOLI] by SWISSPFAM
    • Other resources with information on 1SPU
  • Community annotation for 1SPU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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