1THB Oxygen Transport date Jan 23, 1990
title Refinement Of A Partially Oxygenated T State Haemoglobin At Angstroms Resolution
authors D.A.Waller, R.C.Liddington
compound source
Molecule: Hemoglobin A (Oxy) (Alpha Chain)
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Hemoglobin A (Deoxy) (Beta Chain)
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.800 97.800 65.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand HEM, IHP, OXY enzyme
related structures by homologous chain: 1J3Y, 1UIW
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceRefinement of a partially oxygenated T state human haemoglobin at 1.5 A resolution., Waller DA, Liddington RC, Acta Crystallogr B 1990 Jun 1;46 ( Pt 3):409-18. PMID:2383372
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1thb.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 1THB
  • CSU: Contacts of Structural Units for 1THB
  • Likely Quarternary Molecular Structure file(s) for 1THB
  • Structure Factors (604 Kb)
  • Retrieve 1THB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1THB from S2C, [Save to disk]
  • Re-refined 1thb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1THB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1THB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1THB 1THBA 1THBB 1THBC 1THBD from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1THB, from MSDmotif at EBI
  • Genome occurence of 1THB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1thba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1thbb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1thbc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1thbd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1thb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1thb] [1thb_C] [1thb_B] [1thb_D] [1thb_A]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 1THB
  • Community annotation for 1THB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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