1VM1 Hydrolase date Aug 27, 2004
title Structure Of Shv-1 Beta-Lactamase Inhibited By Tazobactam
authors A.P.Kuzin, M.Nukaga, Y.Nukaga, A.Hujer, R.A.Bonomo, J.R.Knox
compound source
Molecule: Beta-Lactamase Shv-1
Chain: A
Ec: 3.5.2.6
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Bla
Expression_system: Escherichia Coli Str. K-12 Substr. Dh10b
Expression_system_taxid: 316385
Expression_system_strain: Dh10b
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbcsk
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.200 56.100 82.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.02 Å
ligand AKR, MA4, TAZ, TBE BindingDB enzyme Hydrolase E.C.3.5.2.6 BRENDA
note 1VM1 supersedes 1G56
related structures by homologous chain: 1LHY, 1ZG6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInhibition of the SHV-1 beta-lactamase by sulfones: crystallographic observation of two reaction intermediates with tazobactam., Kuzin AP, Nukaga M, Nukaga Y, Hujer A, Bonomo RA, Knox JR, Biochemistry 2001 Feb 13;40(6):1861-6. PMID:11327849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1vm1.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1VM1
  • CSU: Contacts of Structural Units for 1VM1
  • Likely Quarternary Molecular Structure file(s) for 1VM1
  • Retrieve 1VM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VM1 from S2C, [Save to disk]
  • View 1VM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VM1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VM1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vm1a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1vm1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vm1] [1vm1_A]
  • SWISS-PROT database: [P0AD64] [Q9F643]
  • Domain organization of [BLA1_KLEPN] [Q9F643_KLEPN] by SWISSPFAM
  • Other resources with information on 1VM1
  • Community annotation for 1VM1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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