1WUB	Lipid Binding Protein	date	Dec 03, 2004
title	Crystal Structure Of The Polyisoprenoid-Binding Protein, Tt1 Thermus Thermophilus Hb8
authors	N.Handa, M.Idaka, T.Terada, H.Hamana, Y.Ishizuka, S.Y.Park, J.R.H Y.Doi-Katayama, H.Hirota, S.Kuramitsu, M.Shirouzu, S.Yokoyama, R Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Conserved Hypothetical Protein Tt1927b Chain: A Synonym: Polyisoprenoid-Binding Protein Tt1927b Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: C 2 2 21	R_factor 0.219 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 32.561 96.948 109.140 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	OTP	enzyme
note	1WUB supersedes 1UF6
Primary reference	Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8., Handa N, Terada T, Doi-Katayama Y, Hirota H, Tame JR, Park SY, Kuramitsu S, Shirouzu M, Yokoyama S, Protein Sci 2005 Apr;14(4):1004-10. Epub 2005 Mar 1. PMID:15741337

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (1wub.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 1WUB CSU: Contacts of Structural Units for 1WUB Likely Quarternary Molecular Structure file(s) for 1WUB Retrieve 1WUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WUB from S2C, [Save to disk]

View 1WUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WUB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WUB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1wuba_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wub] [1wub_A] SWISS-PROT database: [P83815] Domain organization of [P83815_THETH] by SWISSPFAM Domain found in 1WUB: [YceI ] by SMART

Other resources with information on 1WUB

Community annotation for 1WUB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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